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Mean-field approach for a statistical mechanical model of proteins

Articolo
Data di Pubblicazione:
2003
Abstract:
We study the thermodynamical properties of a topology-based model proposed by Galzitskaya and Finkelstein for the description of protein folding. We devise and test three different mean-field approaches for the model, that simplify the treatment without spoiling the description. The validity of the model and its mean-field approximations is checked by applying them to the beta-hairpin fragment of the immunoglobulin-binding protein (GB1) and making a comparison with available experimental data and simulation results. Our results indicate that this model is a rather simple and reasonably good tool for interpreting folding experimental data, provided the parameters of the model are carefully chosen. The mean-field approaches substantially recover all the relevant exact results and represent reliable alternatives to the Monte Carlo simulations.
Tipologia CRIS:
01.01 Articolo in rivista
Keywords:
BETA-HAIRPIN FORMATION; NATIVE-STATE TOPOLOGY; LANDSCAPE PERSPECTIVE; FOLDING PATHWAYS; TRANSITION-STATE; CONTACT ORDER; KINETICS; DYNAMICS; RATES; LEVINTHAL
Elenco autori:
Cecconi, Fabio
Autori di Ateneo:
CECCONI FABIO
Link alla scheda completa:
https://iris.cnr.it/handle/20.500.14243/189674
Pubblicato in:
THE JOURNAL OF CHEMICAL PHYSICS
Journal
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