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Water-biomolecule clusters studied by photoemission spectroscopy and multilevel atomistic simulations: hydration or solvation?

Articolo
Data di Pubblicazione:
2021
Abstract:
The properties of mixed water-uracil nanoaggregates have been probed by core electron-photoemission measurements to investigate supramolecular assembly in the gas phase driven by weak interactions. The interpretation of the measurements has been assisted by multilevel atomistic simulations, based on semi-empirical tight-binding and DFT-based methods. Our protocol established a positive-feedback loop between experimental and computational techniques, which has enabled a sound and detailed atomistic description of such complex heterogeneous molecular aggregates. Among biomolecules, uracil offers interesting and generalized skeletal features; its structure encompasses an alternation of hydrophilic H-bond donor and acceptor sites and hydrophobic moieties, typical in biomolecular systems, that induces a supramolecular core-shell-like organization of the mixed clusters with a water core and an uracil shell. This structure is far from typical models of both solid-state hydration, with water molecules in defined positions, or liquid solvation, where disconnected uracil molecules are completely surrounded by water.
Tipologia CRIS:
01.01 Articolo in rivista
Keywords:
biomolecular cluster; synchrotron radiation; tight-binding; density functional theory DFT; core photoemission spectroscopy XPS
Elenco autori:
Chiarinelli, Jacopo; Avaldi, Lorenzo; Bolognesi, Paola; Mattioli, Giuseppe; Castrovilli, MATTEA CARMEN
Autori di Ateneo:
BOLOGNESI PAOLA
CASTROVILLI MATTEA CARMEN
CHIARINELLI JACOPO
MATTIOLI GIUSEPPE
Link alla scheda completa:
https://iris.cnr.it/handle/20.500.14243/399598
Pubblicato in:
PCCP. PHYSICAL CHEMISTRY CHEMICAL PHYSICS (PRINT)
Journal
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http://www.scopus.com/record/display.url?eid=2-s2.0-85111302501&origin=inward
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