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Role of protein frame and solvent for the redox properties of azurin from Pseudomonas aeruginosa

Articolo
Data di Pubblicazione:
2006
Abstract:
We have coupled hybrid quantum mechanics (density functional theory; Car-Parrinello)/molecular mechanics molecular dynamics simulations to a grand-canonical scheme, to calculate the in situ redox potential of the Cu2+ + e(-) -> Cu+ half reaction in azurin from Pseudomonas aeruginosa. An accurate description at atomistic level of the environment surrounding the metal-binding site and finite-temperature fluctuations of the protein structure are both essential for a correct quantitative description of the electronic properties of this system. We report a redox potential shift with respect to copper in water of 0.2 eV (experimental 0.16 eV) and a reorganization free energy lambda = 0.76 eV (experimental 0.6-0.8 eV). The electrostatic field of the protein plays a crucial role in fine tuning the redox potential and determining the structure of the solvent. The inner-sphere contribution to the reorganization energy is negligible. The overall small value is mainly due to solvent rearrangement at the protein surface.
Tipologia CRIS:
01.01 Articolo in rivista
Keywords:
BLUE COPPER PROTEINS; RANGE ELECTRON-TRANSFER; REORGANIZATION ENERGY; REDUCTION POTENTIALS; MOLECULAR-DYNAMICS
Elenco autori:
Carloni, Paolo; Magistrato, Alessandra
Autori di Ateneo:
MAGISTRATO ALESSANDRA
Link alla scheda completa:
https://iris.cnr.it/handle/20.500.14243/165942
Pubblicato in:
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Journal
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