Publication Date:
2014
abstract:
Extensive necrosis of the veinlets were observed in early
summer of 2011 on both sides of the leaf blades of a Japanese
persimmon (Diospyros kaki) tree growing in a private
garden in the vicinity of Bari (Apulia, southern Italy). This
tree (accession SSPI) hosted a previously uncharacterized
cryptovirus whose presence was apparently unrelated to
the vein necrosis condition as it occurred also in a large
number of symptomless trees (Morelli et al., 2012). Highthroughput
sequencing analysis of the SSPI virome, performed
on dsRNA extracts with an Illumina platform, allowed
the identification of four contigs which, upon BLAST
analysis (Altschul et al., 1997) showed a 97% sequence
identity at the nucleotide level with sequences of the putative
cytorhabdovirus Persimmon virus A (PeVA, GenBank
AB735628), recently described in Japan (Ito et al., 2013).
The sequence of the largest contig (983 bp), spanning part
of the polymerase gene and the 3'-UTR, was deposited in
GenBank under the accession No. KM407515. To confirm
deep-sequencing findings, the PCR primer set PeVAfor/Pe-
VArev (5'-AGGATCATTACAAAATCCGTGAGG-3'/ 5'-
TTCCCGAAAGACAATCTGTCCC-3'), intended to amplify
a 250 bp product, was designed on the KM407515 sequence.
An amplicon of the expected size was repeatedly obtained
from the symptomatic (SSPI) but not from 10 symptomless
trees. This product was cloned into pSC-A-amp/kan and
custom-sequenced (Macrogen Europe, The Netherlands).
BLAST analysis matched previous identification, as cloned
sequences shared ca. 98% identity with those of the Japanese
PeVA isolate. There was no amplification when RT-PCR assays
were extended to the 10 symptomless persimmon trees.
Whether or not PeVA is involved in the induction of vein
necrosis remains to be ascertained. To our knowledge, this
is the first report of PeVA in a country other than Japan.
Iris type:
01.01 Articolo in rivista
Keywords:
persimmon virus A
List of contributors:
LA NOTTE, Pierfederico; Morelli, Massimiliano; Chiumenti, Michela; Minafra, Angelantonio
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