Publication Date:
2017
abstract:
This note investigates a basic enzymatic scheme,
with a substrate transforming into a product by means of the
catalytic action of an enzyme. The focus is in the role of a
feedback regulating the enzyme production. The novelty of the
paper is in the choice of the feedback, acting from substrate
accumulation differently from previous cases already studied in
the literature, where the feedback acts from the product or from
the enzyme. The feedback scheme is studied according to both
a deterministic and stochastic approach: the former providing
the existence of a unique meaningful asymptotically stable
equilibrium; the latter investigating how noise propagates with
or without the feedback. Regards to the stochastic approach,
the metabolic noise is evaluated in terms of the coefficient
of variation of the product of the enzymatic reaction, aiming
at measuring its fluctuations around the average steady-state.
Numerical results are carried out according to Chemical Master
Equations, showing a clear improvement, in terms of noise
reduction, when the negative feedback is applied. Linear Noise
Approximation has been as well exploited with the aim of
finding analytical solutions for the metabolic noise, relating it
to the model parameters
Iris type:
04.01 Contributo in Atti di convegno
Keywords:
Enzymatic reactions; Stochastic systems; Synthetic biology
List of contributors: