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ShuffleFastaSeq: a Windows form application to shuffle FASTA-formatted sequences

Software
Publication Date:
2016
abstract:
ShuffleFastaSeq is a Windows form application, written in C#, to shuffle FASTA-formatted sequences. The random permutation is obtained using a simple variation of the Fisher-Yates alghorithm implemented by Durstenfeld (https://en.wikipedia.org/wiki/Fisher%E2%80%93Yates_shuffle ) ( Knuth DE. The art of computer programming: seminumerical algorithms. 3rd ed. Boston: Addison-Wesley; 1997). The input file contains one or more sequences in FASTA format. The number of shufflings (n) for each sequence can be set; by default n is 100. The output file contains n shuffled copies in FASTA format for each input sequence.
Iris type:
05.11 Software
Keywords:
fasta; shuffling; sequence; DNA; RNA; protein
List of contributors:
Trotta, Edoardo
Authors of the University:
TROTTA EDOARDO
Handle:
https://iris.cnr.it/handle/20.500.14243/311978
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Overview

URL

https://sourceforge.net/projects/shufflefastaseq/
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