A bioinformatic pipeline for GWAS

Software that brings together the steps needed to build an analysis pipeline for Genome-Wide Association Studies (GWAS). The pipeline describes and executes all the necessary steps involved in a typical GWAS study, which are used to build a reusable and reproducible bioinformatics pipeline. The pipeline is written in Snakemake (Köster and Rahmann, 2012), while the different steps include stand-alone software and R scripts.