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BMC BIOINFORMATICS
Rivista
Codice:
E186220
ISSN:
1471-2105
Dati Generali
Dati Generali
Pubblicazioni (186)
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Ordina Pubblicazioni:
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-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment
Articolo
12th and 13th International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics (CIBB 2015/16)
Curatela
A Bayesian nonparametric method for prediction in EST analysis
Articolo
A Grid based solution for Management and Analysis of Microarrays in distributed experiments
Articolo
A Web-based and Grid-enabled dChip version for the analysis of large sets of gene expression data
Articolo
A computational approach for detecting peptidases and their specific inhibitors at the genome level.
Articolo
A computational framework for qualitative simulation of nonlinear dynamical models of gene-regulatory networks
Articolo
A fuzzy method for RNA-Seq differential expression analysis in presence of multireads
Articolo
A global optimization algorithm for protein surface alignment
Articolo
A hybrid genetic-neural system for predicting protein secondary structure
Articolo
A knowledge-based decision support system in bioinformatics: An application to protein complex extraction
Articolo
A new biomarker panel of ultraconserved long non-coding RNAs for bladder cancer prognosis by a machine learning based methodology
Articolo
A novel biclustering algorithm for the discovery of meaningful biological correlations between microRNAs and their target genes
Articolo
A novel feature selection method to extract multiple adjacent solutions for viral genomic sequences classification
Articolo
A novel molecular dynamics approach to evaluate the effect of phosphorylation on multimeric protein interface: the alpha B-Crystallin case study
Articolo
A preliminary PET radiomics study of brain metastases using a fully automatic segmentation method
Articolo
A scale space approach for unsupervised feature selection in mass spectra classification for ovarian cancer detection
Articolo
A tool for mapping Single Nucleotide Polymorphisms using Graphics Processing Units
Articolo
A tool for mapping Single Nucleotide Polymorphisms using Graphics Processing Units.
Articolo
ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events
Articolo
Ab initio detection of fuzzy amino acid tandem repeats in protein sequences
Articolo
Advantages of using graph databases to explore chromatin conformation capture experiments.
Articolo
Alignment-free analysis of barcode sequences by means of compression-based methods
Articolo
An atlas of annotations of hydra vulgaris transcriptome
Articolo
An extensible six-step methodology to automatically generate fuzzy DSSs for diagnostic applications
Articolo
An infrastructure for precision medicine through analysis of big data
Articolo
An integrated approach to infer cross-talks between intracellular protein transport and signaling pathways
Articolo
An integrative Bayesian Dirichlet-multinomial regression model for the analysis of taxonomic abundances in microbiome data
Articolo
Analysis of miRNA expression profiles in breast cancer using biclustering
Articolo
Analyzing gene expression data for pediatric and adult cancer diagnosis using logic learning machine and standard supervised methods
Articolo
Arabidopsis Motif Scanner
Articolo
Arena-Idb: a platform to build human non-coding RNA interaction networks
Articolo
BATS: A Bayesian user friendly Software for analyzing time series microarray experiments.
Articolo
BATS: a Bayesian user-friendly software for Analyzing Time Series microarray experiments
Articolo
BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments
Articolo
BGBlast: a BLAST grid implementation with database self-updating and adaptive
Articolo
BITS 2015: The annual meeting of the Italian Society of Bioinformatics
Articolo
BITS 2017: the annual meeting of the Italian Society of Bioinformatics
Articolo
BITS2019: the sixteenth annual meeting of the Italian society of bioinformatics
Articolo
BMC Bioinformatics Special Issue: Bringing Mathematics to Life
Curatela
BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS
Articolo
Bioinformatics in Italy: BITS 2012, the ninth annual meeting of the Italian Society of Bioinformatics.
Articolo
Biowep: a workflow enactment portal for bioinformatics applications
Articolo
Browsing isolated population data.
Articolo
CABeRNET: A Cytoscape app for augmented Boolean models of gene regulatory NETworks
Articolo
CORENup: a combination of convolutional and recurrent deep neural networks for nucleosome positioning identification
Articolo
CamurWeb: A classification software and a large knowledge base for gene expression data of cancer
Articolo
Challenging popular tools for the annotation of genetic variations with a real case, pathogenic mutations of lysosomal alpha-galactosidase
Articolo
Characterization of an inducible promoter in different DNA copy number conditions.
Articolo
Characterization of the emergent properties of a synthetic quasi-cellular system
Articolo
Clustering analysis of tumor metabolic networks
Articolo
ComiRNet: a web-based system for the analysis of miRNA-gene regulatory networks
Articolo
Comparative study of gene set enrichment methods.
Articolo
Computational Intelligence in Bioinformatics and Biostatistics: new trends from the CIBB conference series
Curatela
Computational annotation of UTR cis-regulatory modules through Frequent Pattern Mining
Articolo
Computational approaches for isoform detection and estimation: good and bad news
Articolo
CorrelaGenes: a new tool for the interpretation of the human transcriptome.
Articolo
DMET-analyzer: automatic analysis of Affymetrix DMET data
Articolo
Data handling strategies for high throughput pyrosequencers.
Articolo
Deconvolution of bulk blood eQTL effects into immune cell subpopulations
Articolo
Deep learning architectures for prediction of nucleosome positioning from sequences data
Articolo
Deep learning models for bacteria taxonomic classification of metagenomic data
Articolo
Differential diagnosis of pleural mesothelioma using Logic Learning Machine
Articolo
ELIXIR-IT HPC@CINECA: High performance computing resources for the bioinformatics community
Articolo
ESTree db: a tool for peach functional genomics
Articolo
ESTuber db: an online database for Tuber borchii EST sequences
Articolo
Effects of Mecp2 loss of function in embryonic cortical neurons: a bioinformatics strategy to sort out non-neuronal cells variability from transcriptome profiling
Articolo
Emulating complex simulations by machine learning methods
Articolo
Ensemble of Rankers for Efficient Gene Signature extraction in Smoke Exposure Classification
Articolo
Exploratory analysis of transposable elements expression in the C. elegans early embryo
Articolo
Extending rnaSPAdes functionality for hybrid transcriptome assembly
Articolo
FC_analysis: a tool for investigating atomic force microscopy maps of force curves
Articolo
From trash to treasure: detecting unexpected contamination in unmapped NGS data
Articolo
G4PromFinder: an algorithm for predicting transcription promoters in GC-rich bacterial genomes based on AT-rich elements and G-quadruplex motifs
Articolo
GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity database
Articolo
Game of neutrophils: modeling the balance between apoptosis and necrosis
Articolo
Geena 2, improved automated analysis of MALDI/TOF mass spectra.
Articolo
GenHap: A novel computational method based on genetic algorithms for haplotype assembly
Articolo
Gene analogue finder: a GRID solution for finding functionally analogous gene products.
Articolo
GraphFind: enhancing graph searching by low support data mining techniques
Articolo
Guidelines for managing data and processes in bone and cartilage tissue engineering
Articolo
High performance workflow implementation for protein surface characterization using grid technology
Articolo
Highlights from the 11th ISCB Student Council Symposium 2015. Dublin, Ireland. 10 July 2015.
Articolo
HmtDB, a human mitochondrial genomic resource based on variability studies supporting population genetics and biomedical research.
Articolo
How interacting pathways are regulated by miRNAs in breast cancer subtypes
Articolo
IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis
Articolo
IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis.
Articolo
Identification and analysis of conserved pockets on protein surfaces
Articolo
Identification of functionally related genes using data mining and data integration: a breast cancer case study
Articolo
Identification of functionally related genes using data mining and data integration: a breast cancer case study
Articolo
In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study
Articolo
In-silico and in-vivo analyses of EST databases unveil conserved miRNAs from Carthamus tinctorius and Cynara cardunculus.
Articolo
Inferring 3D chromatin structure using a multiscale approach based on quaternions
Articolo
Integrating microRNA target predictions for the discovery of gene regulatory networks: a semi-supervised ensemble learning approach
Articolo
Integration of transcriptomic data in a genome-scale metabolic model to investigate the link between obesity and breast cancer
Articolo
Intuitive representation of surface properties of biomolecules using BioBlender
Articolo
Is this the right normalization? A diagnostic tool for ChIP-seq normalization
Articolo
J-SPACE: a Julia package for the simulation of spatial models of cancer evolution and of sequencing experiments
Articolo
Joint analysis of transcriptional and post-transcriptional brain tumor data: searching for emergent properties of cellular systems
Articolo
Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data
Articolo
Learning to classify species with barcodes
Articolo
Logic Learning Machine creates explicit and stable rules stratifying neuroblastoma patients
Articolo
MIENTURNET: An interactive web tool for microRNA-target enrichment and network-based analysis
Articolo
MIMO: an efficient tool for molecular interaction maps overlap
Articolo
Methods for the integration of multi-omics data: Mathematical aspects
Articolo
Methylation data imputation performances under different representations and missingness patterns
Articolo
MiRNA therapeutics based on logic circuits of biological pathways
Articolo
MiRNATIP: a SOM-based miRNA-target interactions predictor
Articolo
MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa
Articolo
Mobilomics in Saccharomyces cerevisiae strains
Articolo
Modeling Gene Regulatory Network Motifs using Statecharts
Articolo
Modeling lymphocytes homing and encounters in lymph nodes
Articolo
Modelling the interaction of steroid receptors with endocrine disrupting chemicals
Articolo
NGS-Trex: Next Generation Sequencing Transcriptome profile explorer
Articolo
Not proper ROC curves as new tool for the analysis of differentially expressed genes in microarray experiments
Articolo
On the statistical assessment of classifiers using DNA microarray data
Articolo
On the statistical assessment of classifiers using DNA microarray data
Articolo
Ontology-based, Tissue MicroArray oriented, image centered tissue bank
Articolo
Ontology-based, Tissue MicroArray oriented, image centred tissue bank
Articolo
Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society
Articolo
PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text
Articolo
PWHATSHAP: efficient haplotyping for future generation sequencing
Articolo
Performance of Web tools for predicting changes in protein stability caused by mutations
Articolo
Potential predictors of type-2 diabetes risk: machine learning, synthetic data and wearable health devices
Articolo
Prediction of new associations between ncRNAs and diseases exploiting multi-type hierarchical clustering
Articolo
Preface to the BMC-CIBB 2015-16 special issue
Articolo
Preface: BITS2014, the Annual Meeting of the Italian Society of Bioinformatics
Articolo
ProCMD: a database and 3D web resource for protein C mutants.
Articolo
Probabilistic topic modeling for the analysis and classification of genomic sequences
Articolo
Proceedings from the 12th International BBCC conference
Curatela
Protein complex prediction for large protein protein interaction networks with the Core&Peel method
Articolo
Protnet: a stochastic tool for dynamic simulation of protein interaction networks
Articolo
Quasi-cellular systems: stochastic simulation analysis at nanoscale range
Articolo
RIP-Chip analysis supports different roles for AGO2 and GW182 proteins in recruiting and processing microRNA targets
Articolo
Reconstructing networks of pathways via significance analysis of their intersections
Articolo
Regularized Least Squares Cancer Classifiers from DNA microarray data
Articolo
Regularized least squares cancer classifiers from DNA microarray data
Articolo
Removing duplicate reads using graphics processing units
Articolo
RhoTermPredict: an algorithm for predicting Rho-dependent transcription terminators based on Escherichia coli, Bacillus subtilis and Salmonella enterica databases
Articolo
SAveRUNNER: an R-based tool for drug repurposing
Articolo
SING: SUBGRAPH SEARCH IN NON-HOMOGENEOUS GRAPHS
Articolo
SNPLims: A Data Management System for Genome Wide Association Studies
Articolo
SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS
Articolo
SPINNAKER: an R-based tool to highlight key RNA interactions in complex biological networks
Articolo
SQUAT: a web tool to mine human, murine and avian SAGE data
Articolo
SWIM tool application to expression data of glioblastoma stem-like cell lines, corresponding primary tumors and conventional glioma cell lines
Articolo
SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics - exploring current scientific literature for emerging topics
Articolo
Selected papers from the 15th and 16th international conference on Computational Intelligence Methods for Bioinformatics and Biostatistics
Articolo
Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study
Articolo
Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data.
Articolo
StaRTrEK:in silico estimation of RNA half-lives from genome-wide time-course experiments without transcriptional inhibition
Articolo
Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements.
Articolo
Statistical ensemble of gene regulatory networks of macrophage differentiation
Articolo
Stochastic neutral modelling of the Gut Microbiota's relative species abundance from next generation sequencing data
Articolo
Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity
Articolo
TCGA2BED: Extracting, extending, integrating, and querying The Cancer Genome Atlas
Articolo
Tandem Repeats Discovery Service (TReaDS) applied to finding novel Cis-acting factors in Repeat Expansion Diseases
Articolo
The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes
Articolo
The 20th anniversary of EMBnet: 20 years of bioinformatics for the Life Sciences community.
Articolo
The BioLexicon: a large-scale terminological resource for biomedical text mining
Articolo
The EIPeptiDi tool: Enhancing peptide discovery in ICAT-based LC MS/MS experiments
Articolo
The GENIUS Grid Portal and robot certificates: A new tool for e-Science
Articolo
The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections
Articolo
The bioPrompt-box: an ontology-based clustering tool for searching in biological databases
Articolo
The joint NETTAB/Integrative Bioinformatics 2015 Meeting: aims, topics and outcomes
Articolo
Time-course analysis of genome-wide gene expression data from hormone-responsive human breast cancer cells
Articolo
Time-course whole-genome microarray analysis of estrogen effects on hormone-responsive breast cancer cells
Articolo
Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation
Articolo
Towards barcode markers in Fungi: an intron map of Ascomycota mitochondria
Articolo
Towards the integration of mouse databases - definition and implementation of solutions to two use-cases in mouse functional genomics
Articolo
Trends in modeling Biomedical Complex Systems.
Articolo
Use of Attribute Driven Incremental Discretization and Logic Learning Machine to build a prognostic classifier for neuroblastoma patients
Articolo
VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites
Articolo
VaccImm: Simulating peptide vaccination in cancer therapy
Articolo
Var2GO: A web-based tool for gene variants selection
Articolo
Version VI of the ESTree db: an improved tool for peach transcriptome analysis
Articolo
WEP: a high-performance analysis pipeline for whole-exome data
Articolo
Web services and workflow management for biological resources
Articolo
ampliMethProfiler: A pipeline for the analysis of CpG methylation profiles of targeted deep bisulfite sequenced amplicons
Articolo
isma: an R package for the integrative analysis of mutations detected by multiple pipelines
Articolo
miRTissue: a web application for the analysis of miRNA-target interactions in human tissues
Articolo
miRTissue_ce: extending miRTissue web service with the analysis of ceRNA-ceRNA interactions
Articolo
mu-CS: An extension of the TM4 platform to manage Affymetrix binary data
Articolo
mu-CS: An extension of the TM4 platform to manage Affymetrix binary data
Articolo
p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data.
Articolo
p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data.
Articolo
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